Biomedical and Bioinformatics Challenges for Computer Science (BBC) Session 2

Time and Date: 13:25 - 15:05 on 14th June 2017

Room: HG D 1.2

Chair: Mario Cannataro

485 Accelerating the Diffusion-Weighted Imaging Biomarker in the clinical practice: Comparative study [abstract]
Abstract: Diffusion Weighted Image (DWI) methods (ADC and IVIM models) extract meaningful information about the microscopic motions of water of human tissues from MRIs. This is a non invasive method which plays an important role in the diagnosis of ischemic strokes, high grade gliomas or tumors. In the La Fe Polytechnic and University Hospital, the DWI methods aforementioned are used in clinical practice and Matlab is used as a development tool for his out of box performance and fast prototyping. However, each image may require hours to compute due to Matlab environment and interpreted functions. Because of this, its use in clinical practice is limited. In this paper we present three compiled versions on which different parallel paradigms based on multicore (OpenMP) and GPU (CUDA) are applied. These implementations have managed to reduce the computation time to less than one minute, therefore, it allows easing their use in daily clinical practice at a cheap acquisition cost.
Ferran Borreguero Torro, J Damian Segrelles Quilis, Ignacio Blanquer Espert, Angel Alberich Bayarri and Luis Martí Bonmatí
311 Combining Grid Computing and Docker Containers for the Study and Parametrization of CT Image Reconstruction Methods [abstract]
Abstract: Computed tomography (CT) is one of the most widely used methods in Medical Imaging. Despite of its relevance in the diagnosis of diseases with a high impact in our society (such as cancer), it is one of the most potentially harmful modalities. CT requires a high X-ray dose to be induced to the patients. Solving the CT Image Reconstruction problem iteratively in order to approximate the solution allows working with only a subset of the input data required by direct methods. This directly implies a reduction of the radiation received by the patient and a strong reduction on the potential morbidity. Therefore, we aim to study the feasibility of such methods for their actual application, with the purpose of concluding if they are accurate and can obtain good quality images with a lower dose of X rays. This paper discusses the use of containers within a Grid Computing platform to perform a thorough study of all the possible congurations and parameters of various methods being developed to reconstruct CT images iteratively, which could lead to nd the optimal conguration of the parameters. The work compares two approaches for managing the software dependencies of the code: store the software libraries on a Storage Element and using containers for executing the job.
Mónica Chillarón Pérez, Vicente Vidal Gimeno, J. Damià Segrelles Quilis, Ignacio Blanquer Espert and Gumersindo Verdú Martín
280 Investigation of the visual attention role in clinical bioethics decision-making using machine learning algorithms [abstract]
Abstract: This study proposes the use of a computational approach based on machine learning (ML) algorithms to build predictive models using eye tracking data. Our intention is to provide results that may support the study of medical investigation in the decision-making process in clinical bioethics, particularly in this work, in cases of euthanasia. The data used in the approach were collected from 75 students of the nursing undergraduate course using an eye tracker. The available data were processed through feature selection methods, and were later used to create models capable of predicting the euthanasia decision through ML algorithms. Statistical experiments showed that the predictive model resultant from the multilayer perceptron (MLP) algorithm led to the best performance compared with the other tested algorithms, presenting an accuracy of 90.7% and a mean area under the ROC curve of 0.90. Interesting knowledge (patterns and rules) for the studied bioethical decision-making was extracted using simulations with MLP models and inspecting the obtained decision-tree rules. The good performance shown by the obtained MLP predictive model demonstrates that the proposed investigation approach may be used to test scientific hypotheses related to visual attention and decision-making.
Daniel L. Fernandes, Rodrigo Siqueira-Batista, Andréia P. Gomes, Camila R. Souza, Israel T. Da Costa, Felippe Da S. L. Cardoso, João V. De Assis, Gustavo H. L. Caetano and Fabio R. Cerqueira
206 Emotion recognition using facial expressions [abstract]
Abstract: In the article there are presented the results of recognition of seven emotional states (neutral, joy, sadness, surprise, anger, fear, disgust) based on facial expressions. Coefficients describing elements of facial expressions, registered for six subjects, were used as features. The features have been calculated for three-dimensional face model. The classification of features were performed using k-NN classifier and MLP neural network.
Pawel Tarnowski, Marcin Kolodziej, Remigiusz Rak and Andrzej Majkowski
479 Vocal signal analysis in patients affected by Multiple Sclerosis [abstract]
Abstract: Multiple Sclerosis (MS) is one of the most common neurodegenerative disorder that presents specific manifestations among which the impaired speech (known also as dysarthria). The evaluation of the speech plays a crucial role in the diagnosis and follow-up since the identification of anomalous patterns in vocal signal may represent a valid support to physician in diagnosis and monitoring of these neurological diseases. In this contribution, we present a method to perform voice analysis of neurologically impaired patients affected by MS aiming to early detection, differential diagnosis, and monitoring of disease progression. This method integrates two well-known methodologies to support the health structure in MS diagnosis in clinical practice. Acoustic analysis and vowel metric methodologies have been considered to implement this procedure to better define the pathological voices compared to healthy voices. Specifically, the method acquires and analyzes vocal signals performing features extraction and identifying possible important patterns useful to associate impaired speech with this neurological disease. The contribution consists in furnishing to physician a guide method to support MS trend. As result, this method furnishes patterns that could be valid indicators for physician in monitoring of patients affected by MS. Moreover, the procedure is appropriate to be used in early diagnosis that is critical in order to improve the patient's quality of life and to prolong it.
Patrizia Vizza, Domenico Mirarchi, Giuseppe Tradigo, Maria Redavide, Roberto Bruno Bossio and Pierangelo Veltri