Opening and Welcome

Welcome Address (10:00 - 10:15)

Opening Remarks (10:15 - 10:20)

High End Simulation of the Climate and Development of Earth System Models

Towards Knowledge-Based Computing

Large-Scale Scientific Data Managment

Scientific Discovery through Advanced Computing

Computing for Eigenpairs on Globally Convergent Iteration Method For Hermitian Matrices

Presenter: Ran Baik

2D FE Quad Mesh Smoothing via Angle-Based Optimization

Presenter: Hongtao Xu, University of Alabam in Huntsville, USA

Numerical Experiments on the Solution of the Inverse Additive Singular Value Problem

Presenter: Antonio M. Vidal

Computing Orthogonal Decompositions of Block Tridiagonal or Banded Matrices

Presenter: Wilfried Gansterer, University of Vienna, Austria

Adaptive model trust region methods for generalized eigenvalue problems

Presenter: Christopher Baker, Florida State University, USA, United States of America

On Stable Integration of Stiff Ordinary Differential Equations with Global Error Control

Presenter: Sergey Shindin, University of the Witwatersrand, South Africa

Bifurcation analysis of large equilibrium systems in Matlab

Presenter: Mark J. Friedman, University of Alabama in Huntsville, USA

Sliced-Time Computations With Re-Scaling For Blowing-Up Solutions To Initial Value Differential Equations

Presenter: Nabil Nassif, American University of Beirut,, Lebanon

Application of the Pseudo-Transient Technique to a Real-World Unsaturated Flow Groundwater Problem

Presenter: Fred Tracy, ERDC MSRC, USA

Optimization of Spherical Harmonic Transform Computations

Presenter: J. A. ROD BLAIS, University of Calgary, CANADA

Predictor-Corrector Preconditioned Newton-Krylov Method For Cavity Flow

Presenter: Giovanni Lapenta, Los Alamos National Laboratory, USA

A high-order recursive quadratic learning algorithm

Presenter: Qi Zhu, University of Houston - Victoria, USA

Vectorized sparse matrix multiply for compressed row storage format

Presenter: Richard Mills, Oak Ridge National Laboratory, USA

Presenter: Kasthuri Srinivasan

Numerically Stable Real Number Codes Based on Random Matrices

Presenter: ZIZHONG CHEN, UNIVERSITY OF TENNESSEE, KNOXVILLE, USA

On Iterated Numerical Integration

Presenter: Shujun Li, Western Michigan University, USA

Semi-Lagrangian implicit-explicit two-time-level scheme for numerical weather prediction

Presenter: Andrei Bourchtein, Pelotas State University, Brazil

Occlusion Activity Detection Algorithm Using Kalman Filter for Detecting Occluded Multiple Objects

Presenter: Heungkyu Lee, Korea university, Korea

A New Computer Algorithm Approach to Identification of Continuous-time Batch Bioreactor Model Parameters

Presenter: Suna Ertunc, Ankara University, TURKEY

Automated Operation Minimization of Tensor Contraction Expressions in Electronic Structure Calculations

Presenter: Albert Hartono, Ohio State University, USA

Regularization and Extrapolation Methods for Infrared Divergent Loop Integrals

Presenter: Elise de Doncker, Western Michigan University, USA

Use of a Least Squares Finite Element Lattice Boltzmann Method to Study Fluid Flow and Mass Transfer Processes

Presenter: Yusong Li, Vanderbilt University, USA

A Logarithmic Time Method for Two's Complementation

Presenter: Jean-Luc Gaudiot, University of California, USA

Contraction versus Relaxation: The case for greedy approaches

Presenter: Dejan Desovski, West Virginia University, USA

Minimal Load Constrained Vehicle Routing Problems

Presenter: Tolga Bektaş

Static Real-time Scheduling Algorithms using Graph Partitioning

Presenter: Kayhan Erciyes, Izmir Institute of Technology, TURKEY

A Multi-level Approach for Document Clustering

Presenter: SANG-CHEOL SEOK, THE UNIVERSITY OF IOWA, USA

The Symmetric-Toeplitz Linear System Problem in Parallel

Presenter: Pedro Alonso

Parallel Resolution with Newton Algorithms of the Inverse Non-Symmetric Eigenvalue Problem

Presenter: Victor M. García

Computational Challenges in Vector Functional Coefficient Autoregressive Models

Presenter: Ioana Banicescu, Mississippi State University, USA

Multi-Pass Mapping Schemes For Parallel Sparse Matrix Computations

Presenter: Konrad Malkowski, The Pennsylvania State University, United States

High-Order Finite Element Methods for Parallel Atmospheric Modeling

Presenter: Amik St-Cyr, National Center for Atmospheric Research (NCAR), USA

Continuation of Homoclinic Orbits in Matlab

Presenter: Bart Sautois, Ghent University, Belgium

A Numerical Tool for Transmission Lines

Presenter: Hervé Bolvin

The COOLFluiD Framework: Design Solutions for High Performance Object Oriented Scientific Computing Software.

Presenter: andrea lani, von karman institute, belgium

A Problem Solving Environment for Image-Based Computational Hemodynamics

Presenter: Lilit Abrahamyan

MPL: a multiprecision Matlab-like environment

Presenter: Walter Schreppers, University of Antwerp, Belgium

Performance and Scalability Analysis of Cray X1 Vectorization and Multistreaming Optimization

Presenter: Sadaf Alam, Oak Ridge National Laboratory, USA

Super-Scalable Algorithms for Computing on 100,000 Processors

Presenter: Christian Engelmann, Oak Ridge National Laboratory, USA

"gRpas", A Tool for Performance Testing and Analysis

Presenter: Laurentiu Cucos, Western Michigan University, U.S.

Statistical Methods for Automatic Performance Bottleneck Detection in MPI Based Programs

Presenter: Michael Kluge, Technische Universitaet Dresden, Germany

Source Templates for the Automatic Generation of Adjoint Code through Static Call Graph Reversal

Presenter: Jean Utke, Argonne National Laboratory, USA

A Case Study in Application Family Development by Automated Component Composition: h-p Adaptive Finite Element Codes

Presenter: Nasim Mahmood, University of Texas at Austin, USA

Determining consistent states of distributed objects participating in a remote method call

Presenter: Magdalena Sławińska

Storage Formats for Sparse Matrices in Java

Presenter: Mikel Luján

Coupled Fusion Simulation Using the Common Component Architecture

Presenter: Wael Elwasif, Oak Ridge National Laboratory, USA

A Case Study in Distributed Locking Protocol on Linux Clusters

Presenter: Jaechun No, Sejong University, Rep. of Korea

Implementation of a Cluster Based Routing Protocol

Presenter: Marshall,G.

A Bandwidth Sensitive Distributed Continuous Media File System Using The Fibre Channel Network

Presenter: Cuneyt Akinlar, Anadolu University, TURKEY

A Distributed Spatial Index for Time-Efficient Aggregation Query Processing in Sensor Networks

Presenter: Soon-Young Park, Inha University, Korea

Fast Concurrency Control for Distributed Inverted Files

An All-Reduce Operation in Star Networks Using All-to-All Broadcast Communication Pattern

Presenter: Eunseuk Oh, Virginia Commonwealth University, USA

S2F2M - Statistical System for Forest Fire Management

Presenter: Germàn Bianchini

Concurrent Execution of Multiple NAS Parallel Programs on a Cluster

Presenter: Andrzej Goscinski, Deakin University, Australia

Model-Based Statistical Testing of a Cluster Utility

Presenter: William Swain, University of Tennessee, USA

Accelerating Protein Structure Recovery Using Graphics Processors

Presenter: Bryson R. Payne

A Parallel Software Development for Watershed Simulations

Presenter: Jing Ru Cheng, Engineer Research and Development Center, MSRC, USA

Design and Implementation of services for a Synthetic Seismogram Calculation Tool on the Grid

Presenter: Choonhan Youn, San Diego Supercomputer Center, UCSD, USA

Toward GT3 and OGSI.NET Interoperability: GRAM Support on OGSI.NET

Presenter: Marty Humphrey, University of Virginia, USA

GEDAS: A Data Management System for Data Grid Environments

Presenter: Jaechun No, Sejong University, Rep. of Korea

SPURport: Grid Portal for Earthquake Engineering Simulations

Presenter: Tomasz Haupt

Extending Existing Campus Trust Relationships to the Grid through the Integration of Pubcookie and MyProxy

Presenter: Marty Humphrey

Generating Parallel Algorithms for Cluster and Grid Computing

Presenter: Siang Song, Universidade de Sao Paulo - IME, Brazil

Relationship Networks as A Survivable and Adaptive Mechanism for Grid Resource Location

Presenter: Lei Gao, College of Information Sciences and Technology, Dong Hua University, P.

Deployment-Based Security for Grid Applications

Presenter: Arnaud Contes

Grid Resource Selection by Application Benchmarking for Computational Haemodynamics Applications

Presenter: Alfredo Tirado-Ramos, University of Amsterdam, The Netherlands

AGARM: An Adaptive Grid Application and Resource Monitor Framework

Presenter: Wenju Zhang, Shanghai Jiao Tong University, China

Reducing Transaction Abort Rate of Epidemic Algorithm in Replicated Databases

Presenter: Huaizhong Lin

Snap-Stabilizing k-Wave Synchronizer for Rooted Tree

Presenter: Doina Bein, University of Nevada, Las Vegas, USA

A Service Oriented Implementation of Distributed Status Monitoring and Fault Diagnosis Systems

Presenter: Lei Wang, College of Computer Science, China

Adaptive Fault Monitoring in Fault Tolerant CORBA

Presenter: Soo Myoung Lee, Sungkyunkwan University, Korea

Simulated Annealing based-GA using injective contrast fucntions for BSS

Presenter: Juan Manuel Górriz

A dna coding scheme for searching stable solutions

Presenter: Hwan Il Kang, Myongji Univ., South Korea

Study on Asymmetric Two-lane Traffic Model Based on Cellular

Presenter: Xianchuang Su, Zhejiang University, China

Simulation of Parasitic Interconnect Capacitance for Present and Future ICs

Presenter: Grzegorz Tosik

Self-Optimization of Large Scale Wildfire Simulations

Presenter: Salim Hariri, University of Arizona, USA

Description of turbulent events through the analysis of POD modes in numerically simulated turbulent channel flow

Presenter: Giancarlo Alfonsi, Università della Calabria, Italy

Computational Modeling of Human Head Conductivity

Presenter: Sergei Turovets, University of Oregon, USA

Modeling of Electromagnetic Waves in Media with Dirac Distribution of Electric Properties

Presenter: Hervé Bolvin

Simulation of transient mechanical wave propagation in heterogeneous soils

Presenter: Arnaud MESGOUEZ, UMR Climate, Soil and Environment, UNIVERSITE d\'Avignon et des

Practical Modelling for Generating Self-Similar VBR Video Traffic

Presenter: Hae-Duck Joshua Jeong, Department of Information Science, Korean Bible Universit

A Pattern Search Method for Image Registration

Presenter: Hong Zhou, Department of Mathematics, Saint Joseph College, USA

Water Droplet Morphing Combining Rigid Transformation

Presenter: no

A Cost-Effective Private-Key Cryptosystem for Color Image Encryption

Presenter: Konstantinos N. Plataniotis

On a Generalized Demosaicking Procedure: A Taxonomy of Single-Sensor Imaging Solutions

Presenter: Konstantinos N. Plataniotis

Tile classification using the CIELAB color model

Presenter: Christos Nikolaos Anagnostopoulos, University of the Aegean, GREECE

A Movie is Worth More Than a Million Data Points

Presenter: Hans-Peter Bischof, RIT, United States

A Layout Algorithm for Signal Transduction Pathways as Two-Dimensional Drawings with Spline Curves

Presenter: Kyungsook Han, Inha University, South Korea

Interactive Fluid Animation and Its Applications

Presenter: Jeongjin Lee, Seoul National University, Korea

ATDV: An Image Transforming System

Presenter: Paula Farago

An Adaptive Collision Detection and Resolution for Deformable Objects Using Spherical Implicit Surface

Presenter: Sunhwa Jung, University of Colorado at Denver and Health Sciences Center, USA

Automatic Categorization of Traditional Chinese Painting Images with Statistical Gabor Feature and Color Feature

Presenter: Zhaohui Wu

Nonlinear Finite Element Analysis of Structures Strengthened with Carbon Fibre Reinforced Polymer: A Comparison Study

Presenter: X S Yang

Machine Efficient Adaptive Image Matching Based on the Nonparametric Transformations

Non-gradient, Sequential Algorithm for Simulation of Nascent Polypeptide Folding

Time Delay Dynamic Fuzzy Networks for Time Series Prediction

A Hybrid Heuristic Algorithm for the Rectangular Packing Problem

Presenter: Defu Zhang, Xiamen University, China

Genetically Dynamic Optimization based Fuzzy Polynomial Neural Networks

Presenter: Yong-Kab Kim, Department of Electrical Electronic and Information Engineering, W

Genetically Optimized Hybrid Fuzzy Neural Networks Based on Simplified Fuzzy Inference Rules and Polynomial Neurons

Presenter: Oh,S.-K.

Modelling and Constraint Hardness Characterisation of the Unique-Path OSPF Weight Setting Problem

Presenter: Changyong Zhang, Imperial College London, United Kingdom

Application of Four-dimension Assignment Algorithm of Data

Presenter: ZHOU Li, Research Institute of Information Fusion, Naval Aeronautical Engineeri

Using Rewriting Techniques in the Simulation of Dynamical Systems: Application to the Modeling of Sperm Crawling

Presenter: Antoine Spicher, LaMI - University of Evry, FRANCE

Specifying complex systems with Bayesian Programming. An Alife Application

Presenter: Fidel Aznar

Optimization Embedded in Simulation on Models Type System Dynamics - Some Case Study

Presenter: Elżbieta Kasperska

A High-level Petri Net Based Decision Support System for Real-time Scheduling and Control of Flexible Manufacturing Systems: An Object-Oriented Approach

Presenter: GONCA TUNCEL, UNIVERSITY OF DOKUZ EYLUL, TURKEY

Mesoscopic Simulation for Self-Organization in Surface Processes

Presenter: David Horntrop, New Jersey Institute of Technology, USA

Computer simulation of the anisotropy of fluorescence in ring molecular systems

Presenter: Pavel Herman, University of Hradec Kralove, Czech Republic

The deflation accelerated Schwarz method for CFD

Presenter: Kees Vuik, Delft University of Technology, The Netherlands

The Numerical Approach to Analysis of Microchannel Cooling Systems

Presenter: Malgorzata Langer, Technical University of Lodz - Institute of Electronics, Pola

Simulation of Nonlinear Thermomechanical Waves with an Empirical Low Dimensional Model

Presenter: Roderick Melnik, Wilfrid Laurier University, Canada

A Computational Risk Assessment Model for Breakwaters

Wavelets and Wavelet Packets Applied to Termite Detection

Presenter: Juan-José González de-la-Rosa

Algorithms for the Estimation of the Concentrations of Chlorophyll A and Carotenoids in Rice Leaves from Airborne Hyperspectral Data

Presenter: Yanning GUAN, Institute of Remote Sensing Applications, Chinese Academy of Scie

Multiresolution Reconstruction of Pipe-shaped Objects from Contours

Presenter: Kyungha Min, Rutgers Univ., US

Multi-resolution LOD Volume Rendering In Medicine

Presenter: kai xie, Inst. of Image Processing & Pattern Recognition, P. R. China

Automatic Hepatic Tumor Segmentation Using Statistical Optimal Threshold

Presenter: Seung-Jin Park, Chonnam National University Medical School, South Korea

Spatio-temporal Patterns in the Depth EEG during the Epileptic Seizure

Presenter: Jung Ae Kim

Prediction of Ribosomal Frameshift Signals of User-Defined Models

Presenter: Yanga Byun, Inha University, South Korea

Effectiveness of vaccination strategies for infectious diseases according to human contact networks

Presenter: Fumihiko Takeuchi, Dept. Infection Control Science, Juntendo Univ., Japan

A Shape Constraints based Method to Recognize Ship Objects from High Spatial Resolution Remote Sensed Imagery

Presenter: Min Wang, Institute of Geographical Sciences and Natural Resources Research, Chi

Statistical Inference Method of User Preference on Broadcasting Content

Presenter: Sanggil Kang

Density-based Spatial Outliers Detecting

Presenter: Tianqiang Huang, Department of Computer Science and Engineering, Nanjing Univers

The Design and Implementation of Extensible Information Services

Presenter: Wei Guiyi, Zhejiang Gongshang University, P. R. China & Zhejiang University, P.

Approximate B-spline surface based on RBF neural networks

Presenter: Houkuan Huang

Efficient Parallelization of Spatial Approximation Trees

Presenter: Mauricio Marin, University of Magallanes, Chile

The Visualization of Linear Algebra Algorithms In Apt Apprentice

Presenter: Christopher Andrews, University Of New Brunswick, Canada

A Visual Interactive Framework for Formal Derivation

Presenter: Paul Agron, Stony Brook University, USA

ECVlab: A Web-based Virtual Laboratory System for Electronic Circuit Simulation

Presenter: Ouyang Yang, College of Computer Science and Technology, China

MTES: Visual Programming Environment for Teaching and Research in Image Processing

Presenter: Oksam Chae, Department of Computer Engineering, Kyunghee University, South Korea

Advancing Scientific Computation by Improving Scientific Code Development: Symbolic Execution and Semantic Analysis

Scale-free Networks: A Discrete Event Simulation Approach

Presenter: Rex Kincaid, College of William and Mary, USA

Impediments to Future Use of Petaflop Class Computers for Large-Scale Scientific/Engineering Applications in U.S. Private Industry

The SCore Cluster Enabled OpenMP Environment: Performance and Prospects for Computational Science

Presenter: Alistair Rendell, Australian National University, Australia

Organized by Denis Donnelly and Ulrich Ruede

The use of HPC in bachelor's and master's level degree programs is highly varied. Papers presented in this session will focus on either the high performance systems or the associated applications the authors use and/or have developed for educational settings. To support HPC in academia (course work and modest research projects (not PhD thesis level)), we wish to begin the assembly of a resource base for educational practitioners. The papers from this session, the corresponding slides, and other appropriate materials will be made available at a website associated with the journal Computing in Science and Engineering.

Teaching High-Performance Computing on a High-Performance Cluster

Presenter: Hans-Joachim Bungartz, TU Muenchen, Department of Computer Science, Germany

Teaching High-Performance Computing Parallelizing a Real Computational Science Application

Presenter: Massimo Cafaro, University of Lecce, Italy, Italy

Introducing Design Patterns, Graphical User Interfaces and Threads within the Context of a High Performance Computing Application

Presenter: A.P. Rendell

High Performance Computing Education for Students in Computational Engineering

Presenter: Uwe Fabricius

Integrating Teaching and Research in HPC: Experiences and Opportunities

Presenter: Mike Kirby, School of Computing, University of Utah, USA

Education and Research Challenges in Parallel Scientific Computing

Presenter: L.R. Scott

Academic Challenges in Large-Scale Multiphysics Simulations

Presenter: M. T. Heath

Balancing Computational Science and Computer Science Research on a Terascale Computing Facility

Presenter: Calvin Ribbens, Virginia Tech, US

Computational Options for Bioinformatics Research in Evolutionary Biology

Presenter: Michael Thomas, Idaho State University, United States

Financial Computations on Clusters using Web Services

Presenter: Shirish Chinchalkar, Cornell Theory Center, USA

"Plug-and-Play" Cluster Computing. HPC Designed for the Mainstream Scientist

Presenter: Dean Dauger, Dauger Research, Inc., United States

Building an HPC Watering Hole for Boulder Area Computational Science

Presenter: Henry Tufo, National Center for Atmospheric Research (NCAR), USA

The Dartmouth Green Grid

Presenter: James Dobson, Dartmouth College, USA

Resource-aware Parallel Adaptive Computation for Clusters

Presenter: James Teresco, Williams College, USA

Organized by Dieter Kranzlmueller

New Algorithms for Performance Trace Analysis based on Compressed Complete Call Graphs

Presenter: Andreas Knüpfer

PARADIS: Analysis of Transaction-based Applications in Distributed Environments

Presenter: Christian Glasner, Research Studios Austria, Studio AdVISION, AUSTRIA

Automatic Tuning of Data Distribution Using Factoring in Master/Worker Applications

Presenter: Emilio Luque, Universitat Autònoma de Barcelona, Spain

DynTG: A Tool for Interactive, Dynamic Instrumentation

Presenter: Martin Schulz, Lawrence Livermore National Laboratory, USA

Rapid Development of Application-Specific Network Performance Tests

Providing Interoperability for Java-oriented Monitoring Tools with JINEXT

Presenter: Włodzimierz Funika

RDVIS: a Tool that Visualizes the Causes of Low Locality and Hints Program Optimizations

Presenter: Kristof Beyls, Ghent University, Belgium

CacheIn: A Toolset for Comprehensive Cache Inspection

Presenter: Jie Tao, Institute of Computer Design and Fault Tolerance, University of Karlsru

Optimization-oriented Visualization of Cache Access Behavior

Presenter: J. Tao

Collecting and Exploiting Cache-Reuse Metrics

Presenter: Josef Weidendorfer, Technische Universität München, Germany, Germany

Organized by Frederic Loulergue

Computational Science applications are more and more complex to develop and require more and more computing power. Parallel and grid computing are solutions to the increasing need for computing power. High level languages offer a high degree of abstraction which eases the development of complex systems. Being based on formal semantics, it is even possible to certify the correctness of critical parts of the applications.

Algorithmic skeletons, parallel extensions of functional languages, such as Haskell and ML, or parallel logic and constraint programming, parallel execution of declarative programs such SQL queries, etc. have produced methods and tools that improve the price/performance ratio of parallel software, and broaden the range of target applications.

The PAPP workshop focuses on practical aspects of high-level parallel programming: design, implementation and optimization of high-level programming languages and tools (performance predictors working on high-level parallel/grid source code, visualizations of abstract behaviour, automatic hotspot detectors, high-level GRID resource managers, compilers, automatic generators, etc.), applications in all fields of computational science, benchmarks and experiments. Research on high-level grid programming is particularly relevant.

The PAPP workshop is aimed both at researchers involved in the development of high level approaches for parallel and grid computing and computational science researchers who are potential users of these languages and tools.

Managing Heterogeneity in a Grid Parallel Haskell

Presenter: Abdallah Al Zain, Heriot-Watt University, UK

An efficient equi-semi-join algorithm for distributed architectures

Presenter: Mostafa Bamha

Two Fundamental Concepts in Skeletal Programming

Presenter: Anne Benoit, The University of Edinburgh, Scotland, UK

A formal framework for orthogonal data and control parallelism handling

Presenter: Sonia Campa, Department of Computer Science - University of Pisa, Italy

Empirical Parallel Performance Prediction from Semantics-based Profiling

Presenter: Greg Michaelson, Heriot-Watt University, Scotland

Presenter: Yang Zhang, Mississippi State University, USA

Organized by Yi Pan and Alexander Zelikovsky

Research and development in bioinformatics and computational biology require the cooperation of specialists from the fields of biology, computer science, mathematics, statistics, physics, and such related sciences. It is the comprehensive application of mathematics (e.g., probability and graph theory), statistics, science (e.g., biochemistry), and computer science (e.g., computer algorithms and machine learning) to the understanding of living systems. Bioinformatics is fast emerging as an important discipline for academic research and industrial application. The aim of this workshop is to bring together researchers, developers and practitioners in order to discuss various aspects of bioinformatics and computational biology and their applications.

Disjoint Segments with Maximum Density

Presenter: Yen Hung Chen, Department of Computer Science, National Tsing Hua University, Re

What makes the ARC-Preserving Subsequence problem hard?

Presenter: Guillaume Blin, LINA, France

A Parallel Implementation for Determining Genomic Distances under Deletion and Insertion

Presenter: Hui Liu

Optimal Group Testing Strategies with Interval Queries and Their Application to Splice Site Detection

Presenter: Peter Damaschke, Computer Science, Chalmers University, Sweden

Wiener Indices of Balanced Binary Trees

Presenter: Sergey Bereg, U of Texas at Dallas, USA

Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides

Presenter: Osamu Maruyama, Kyushu University, Japan

Phylogenetic Networks, Trees, and Clusters

Presenter: Luay Nakhleh, Rice University, USA

Experimental Analysis of a New Algorithm for Partial Haplotype Completion

Presenter: Paola Bonizzoni, Dipartimento di Informatica Sistemistica e Comunicazione Univer

k-Recombination Haplotype Inference in Pedigree

Presenter: Francis Chin, University of Hong Kong, China

Phasing and Missing data recovery in Family Trios

Presenter: Alexander Zelikovsky, Computer Science Deprtment, Georgia State University, USA

An Efficient Dynamic Programming Algorithm and Implementation for RNA Secondary Structure Prediction

Presenter: Xinchun Liu, the institute of computing technology, chinese academy of sciences,

Simultaneous Alignment and Structure Prediction of RNAs: Are Three Input Sequences Better than Two?

Presenter: Marcel Turcotte, University of Ottawa, School of Information Technology and Engi

Improving the Sensitivity and Specificity of Protein Homology Search by

Presenter: Bin Ma

Profilling and Searching for RNA Pseudoknot structure in Genomes

Presenter: Chunmei Liu

SWAT: A New Spliced Alignment Tool Tailored for Handling More Sequencing Errors

Presenter: Yifeng Li

Performance Evaluation of Protein Sequence Clustering Tools

Presenter: Haifeng Liu, DSO National Laboratories, Singapore

String Kernels of Imperfect Matches for Off-Target Detection in RNA Interference

Presenter: Shibin Qiu, University of New Mexico, Department of Computer Science, USA

A New Kernel Based on High-Scored Pairs of Tri-peptides and Its Application in Prediction of Protein Subcellular Localization

Presenter: ZHENGDENG LEI, UNIVERSITY OF ILLINOIS AT CHICAGO, USA

Clustering using Adaptive Self-Organizing Maps (ASOM) and Applications

Presenter: Yong Wang

Integrating Text Chunking with Mixture Hidden Markov Models for Effective Biomedical Information Extraction

Presenter: Min Song

Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays

Presenter: Ion Mandoiu, University of Connecticut, USA

Highly Scalable Algorithms for Robust String Barcoding

Presenter: Kishori Konwar, University of Connecticut, USA

Virtual Gene: a Gene Selection Algorithm for Sample Classification on Microarray Datasets

Presenter: Xian Xu, State University of New York at Buffalo, USA

A Data-Adaptive Approach to cDNA Microarray Image Enhancement

Presenter: Konstantinos N. Plataniotis, University of Toronto, Canada

Organized by Andres Iglesias

In the last few years, Computer Graphics and Geometric Modeling have become some of the most important and challenging areas of Computer Science. This workshop solicits high-quality papers for presentation describing original research results in any area of Computer Graphics and Geometric Modeling.

Modeling and animating hand wrinkles

Presenter: Jian Zhang, Bournemouth University, UK

Simulating wrinkles in facial expressions on an anatomy-based face

Presenter: Yu Zhang, National University of Singapore, USA

Multiresolutional facial motion retargetting

Presenter: Kyungha Min, Sogang Univ., Korea

New 3D Graphics Rendering Engine Architecture for Direct Tessellation of Spline Surfaces

Presenter: Adrian Sfarti, UC Berkeley, USA

Fast water animation using the wave equation with damping

Presenter: Gennadiy Nikishkov, University of Aizu, Japan

A comparative study of acceleration techniques for geometric visualization

Presenter: Pascual Castelló

Building chinese ancient architectures in seconds

Presenter: Wei HUA, State Key Lab of CAD&CG, Zhejiang University, P.R.China

Accelerated 2D image processing on GPUs

Presenter: Bryson Payne, Georgia College & State University, USA

Consistent Spherical Parameterization

Presenter: Prakash Arul, School of Computing, University of Utah, USA

Mesh Smoothing via Adaptive Bilateral Filtering

Presenter: Qibin Hou

Towards a bayesian approach to robust finding correspondances in multiple view geometry environments

Presenter: Cristian Canton-Ferrer, Technical University of Catalonia, Spain

Managing Deformable Objects in Cluster Rendering

Presenter: Thomas Convard, LIMSI - CNRS, FRANCE

Revolute quadric decomposition of canal surfaces and its applications

Presenter: Jinyuan Jia, Zhuhai College of Jilin University, P. R. China

Adaptive surface modeling using a quadtree of quadratic finite elements

MC slicing for volume rendering applications

Presenter: Aassif Benassarou

Modelling and Sampling Ramified Objects with Substructure-Based Method

Presenter: Weiwei Yin, Institute of Automation, Chinese Academy of Sciences, China

Integration of multiple segmentation based environment models

Presenter: SeungTaek Ryoo, Dept. of Software, HanShin Univ., Korea

On the Impulse Method for Cloth Animation

Presenter: Juntao Ye, University of Western Ontario, Canada

Remeshing triangle meshes with boundaries

Presenter: Yong Wu, Department of Computer Science & Technology, Shanghai Jiao Tong Univers

SACARI: an Inmersive remote driving interface for autonomous vehicles

Presenter: Antoine Tarault, LIMSI-CNRS, France

A 3D model retrieval method using 2D freehand sketches

Presenter: Pu Jiantao, Purdue University, USA

A 3D User Interface for Visualizing Neuron Location in Invertebrate Ganglia

Presenter: Jason Pamplin, Georgia State University, USA

Organized by Andres Iglesias

Computer Algebra (also known as Symbolic Computation or Computational Algebra) has found applications in many domains of science such as mathematics, physics, chemistry, engineering, computer science, computational biology, education, etc. The computer algebra systems (CAS) such as Mathematica, Maple, MuPAD, Reduce, Axiom, Lie, Matlab, Scilab, CoCoa, MuMATH, Derive, Pari-GP, SMP, MathCAD (and many others that have been developed so far) are becoming more and more popular and now they are valuable tools for teaching, research and industry.

An Algebraic Method for Analyzing Open-Loop Dynamic Systems

Presenter: Wenqin Zhou, University of Western Ontario, Canada

Pointwise and Uniform Power Series Convergence

Presenter: Ciro D\'Apice, DIIMA-University of Salerno, Italy

Presenter: Hitoshi Yanami, FUJITSU LABORATORIES LTD., Japan

A LiE subroutine for computing prehomogeneous spaces associated with complex nilpotent orbits

Presenter: Steven Glenn Jackson, University of Massachusetts Boston, United States

Computing Valuation Popov Forms

Presenter: Yang Zhang, Dept. of Mathematics and Computer Science, Canada

Modeling and Simulation of High-Speed Machining Processes Based on Matlab/Simulink

Presenter: Rodolfo Haber, Instituto de Automática Industrial (CSIC), VAT Q2818002D, Spai

Remote Access to a Symbolic Computation System for Algebraic Topology: a Client-Server Approach

Presenter: Mirian Andres, Departamento de Matematicas y Computacion, Universidad de La Rioj

Symbolic Calculation of the Generalized Inertia Matrix of Robots with a Large Number of Joints

Presenter: Cepulkauskas Algimantas

Revisiting Some Control Schemes for Chaotic Synchronization with Mathematica

Presenter: Andres Iglesias, University of Tsukuba (Japan), Japan

Three Brick Method of the Partial Fraction Decomposition of Some Type of Rational Expression

Presenter: Damian Słota

Stokes-Flow Problem Solved using Maple

Presenter: David Jeffrey, University of Western Ontario, Canada

Organized by Hyunseung Choo

The up-coming Gbps networks are expected to support a wide range of communication -intensive and real-time multimedia applications. The requirement for timely delivery of live audio-visual data raises new challenges for the next generation integrated-service broadband networks. Efficient wireless and mobile system in any networking environment is important. This is an important application area to Computational Science as it requires mathematical modeling and computer simulation systems. The scope of the proposed workshop includes IP networks, routing and wavelength assignment in optical networks, routing and handoff in mobile networks, channel allocation, ad hoc and sensor networks, wireless LANs and PANs, and some recent advances. The goal of this workshop is to share research, experiences, and ideas among researchers in this field.

Enhanced TCP with End-to-End Bandwidth and Loss Differentiation Estimate over Heterogeneous Networks

Presenter: Choong Seon Hong, Kyung Hee University, Korea

Content-Aware Automatic QoS Provisioning for UPnP AV-based Multimedia Services over Wireless LANs

Presenter: Yeali S. Sun

Simulation Framework for Wireless Internet Access Networks

Presenter: Hyoung-Kee Choi, Sungkyunkwan University, Korea

WDM: An Energy-Efficient Multi-hop Routing Algorithm for Wireless Sensor Networks

Presenter: Zhaohui Wu

Forwarding Scheme Extension for Fast and Secure Handoff in Hierarchical MIPv6

Presenter: Hoseong Jeon

Back-Up Chord : Chord Ring Recovery Protocol for P2P File Sharing over MANETs

Presenter: Hong-Jong Jeong, Kyungpook National University, Korea

PATM: Priority-based Adaptive Topology Management for Efficient Routing in Ad Hoc Networks

Presenter: Haixia TAN, University of California, Irvine, USA

Practical and Provably-Secure Multicasting over High-Delay Networks

Presenter: Junghyun Nam, School of Information and Communication Engineering, Sungkyunkwan

A Novel IDS Agent Distributing Protocol for MANETs

Presenter: Xin Jin, Department of Computer Science & Technology of Tsinghua University, Chi

Reliable Forwarding Scheme Based on Session Key Reuse Mechanism in HMIPv6 with AAA

Presenter: Kwang Chul Jeong

An Efficient Wireless Resource Allocation and An Efficient Wireless Resource Allocation Based on a Data Compressor Predictor

Presenter: Xiaolong Yang

A Seamless Handover Mechanism for IEEE 802.16e Broadband Wireless Access

Presenter: Kyung-ah Kim, KT, Korea

Fault Tolerant Coverage Model for Sensor Networks

Presenter: Doina Bein, University of Nevada, Las Vegas, USA

Detection Algorithm Based on Chip-Level Processing for DS CDMA Code Acquisition in Fast Fading Channels

Presenter: Seokho Yoon, Sungkyunkwan University (SKKU), South Korea

Clustering-based Distributed Precomputation for Quality-of-Service Routing

Presenter: Yong Cui, Tsinghua University, P.R.China

Traffic Grooming Algorithm Using Shortest EDPs Table in WDM Mesh Networks

Presenter: Seungsoo Lee

Efficient Indexing of Moving Objects Using Time-based Partitioning with R-Tree

Presenter: Yoon Chul Jung, Sungkyunkwan University, Korea

Publish/Subscribe Systems on Node and Link Error Prone Mobile Environments

Presenter: Sangyoon Oh

A Power Efficient Routing Protocol in Wireless Sensor Networks

Presenter: Hyunsook Kim, Kyungpook university, Korea

Applying Mobile Agent to Intrusion Response for Ad Hoc Networks

Presenter: ping yi, fudan university, China

A Vertical Handoff Decision Process and Algorithm Based on Context Information in CDMA-WLAN Interworking

Presenter: JangSub Kim, Sunkyunkwan University, South Korea

Organized by Krzysztof Cetnarowicz and Robert Schaefer

Grounding a Descriptive Language in Cognitive Agents using Consensus Methods

Fault-tolerant and Scalable Protocols for Replicated Services in Mobile Agent Systems

Presenter: JinHo Ahn, Department of Computer Science, Kyonggi University, Republic of Korea

Multi-Agent System Architectures for Wireless Sensor Networks

Presenter: Richard Tynan

ACCESS: An Agent based Architecture for the Rapid Prototyping of Location Aware Services

Presenter: Robin Strahan, Department of Computer Science, University College Dublin, Irelan

Immune-based Optimization of Predicting Neural Networks

Presenter: -

Algorithm of Behavior Evaluation in Multi-Agent System

Presenter: Gabriel Rojek, AGH University of Science and Technology, Department of Computer

Formal Specification of Holonic Multi-Agent Systems Framework

Presenter: Sebastian Rodriguez

The Dynamics of Computing Agent Systems

Presenter: Marek Grochowski, Jagiellonian University, Institute of Computer Science, Poland

Organized by Maciej Malawski and Gunther Stuer

Multi-domain heterogeneous distributed computing has matured considerably, but much of the emphasis has primarily been on infrastructural and administrative issues. In particular, suitable programming models for such environments have only recently received attention. The goal of this workshop, to be held in conjunction with the ICCS 2005 conference, is to bring together researchers interested in all aspects of programming models, paradigms, languages, libraries, and runtime systems with a focus on matching the special characteristics of grid and metacomputing systems to application programming and development.

Bulk Synchronous Parallel ML: Modular Implementation and Performance Prediction

Presenter: Frederic Loulergue, University Paris Val de Marne - LACL, FRANCE

Fast Expression Templates

Presenter: Jochen Härdtlein

Solving Coupled Geoscience Problems on High Performance Computing Platforms

Presenter: Dany Kemmler, Center of Applied GeoScience, University of Tuebingen, Germany, Ge

H2O Metacomputing - Jini Lookup and Discovery

Presenter: Dirk Gorissen, University of Antwerp, Belgium

User Experiences with Nuclear Physics calculations on H2O and on the BEgrid

Presenter: Peter Hellinckx, University of Antwerp, Belgium

Organized by Jemal H. Abawajy

Applications such as eScience and eBusiness involve geographically distributed and heterogeneous resources such as computational resources, scientific instruments, and databases. The data in these applications is usually massive and distributed across numerous institutions for various reasons including, the inherent distribution of data sources; large-scale storage and computational requirements; to ensure high-availability and fault-tolerance of data; and caching to provide faster access. The users in such complex environments should be able to carry out analysis of the data generated by the experiments by transparently accessing distributed datasets and computational resources. Building, managing, and operating such distributed data and storage systems in autonomic manner are not only challenging, but also presents a large business opportunity for industries.

TH-VSS: an asymmetric storage virtualization system for the SAN environment

Presenter: Da Xiao, CS Dept. Tsinghua Univ. Beijing, China, China

Design and Implementation of the Home-based Cooperative Cache for PVFS

Presenter: Inchul Hwang, KAIST (Korea Avdvance Institute of Science and Technology), Rep. o

Improving the Data Placement Algorithm of Randomization in SAN

Presenter: Nianmin Yao, Institue of High Performance Computing and Technology, China

Safety of a Server-Based Version Vector Protocol Implementing Session Guarantees

Presenter: Cezary Sobaniec, Poznan University of Technology, Poland

Scalable Hybrid Search on Distributed Databases

Presenter: Jungkee Kim, Florida State University and Community Grids Laboratory at Indiana

Storage QoS Control with Adaptive I/O Deadline Assignment and Slack-Stealing EDF

Presenter: Young Jin Nam

ENHANCED-DNS DISPATCHING ALGORITHM ON HIGH RELIABILITY REPLICATION TECHNIQUE FOR WEB-SERVER CLUSTER SYSTEMS

Presenter: J.H. Abawajy

An Efficient Replicated Data Management Approach for Peer-to-Peer Systems

Organized by Yong Xue

GeoComputation is concerned with using various different types of geographical and environmental data and developing relevant tools within the overall context of a computational scientific approach.

GeoComputation is concerned with new computational techniques, algorithms, and paradigms that are dependent upon and can take advantage of high performance computing (HPC) and high throughput computer (HTC). It includes spatial data analysis, dynamic modeling, simulation, space-time dynamics and visualization and virtual reality.

Grid Research on desktop type software for spatial information processing

Presenter: Li Guoqing, Remote-Sensing Satellite Ground Station, Chinese Academy of Sciences

Java-based Grid Service Spread and Implementation in Remote Sensing Applications

Presenter: Yanguang Wang, Institute of Remote Sensing Applications,Chinese Academy of Scien

Self-Organizing Maps as efficient initialization procedures and substitutes for k-means clustering

Presenter: Victor Lobo, Escola Naval, PORTUGAL

Key Technologies Research on Building a Cluster-based Parallel Computing System for Remote Sensing

Presenter: Guoqing Li

Design Hierarchical Component-based WebGIS

Presenter: Yingwei LUO, Dept. of Computer Science and Technology, Peking University, China

Explore Disease Mapping of Hepatitis B Using Geostatistical Analysis Techniques

Presenter: Shaobo Zhong, Institute of Remote Sensing Applications, China

Organized by Yong Shi

The workshop focus on computational economics and finance including but not limited to modeling, numeric computation, algorithmic and complexity issues in arbitrage, asset pricing, future and option pricing, risk management, credit assessment, interest rate determination, insurance, foreign exchange rate forecasting and portfolio selection, financial optimization with applications, online auction, cooperative game theory, general equilibrium, information pricing, network band witch pricing, rational expectation, repeated games, etc.

Adaptive Smoothing Neural Networks in Foreign Exchange Rate Forecasting

Presenter: Kin Keung Lai

Credit scoring via PCALWM

Presenter: LI Jianping, Institute of policy & Management, Chinese of Academy of Sciences, P

Optimization and Risk Analysis of Capacity Allocation in Communication Networks

Presenter: Wuyi Yue, Konan University, Japan

Improving Clustering Analysis for Credit Card Accounts Classification

Presenter: Yong Shi, University of Nebraska at Omaha, USA

A Fuzzy Index Tracking Portfolio Selection Model

Presenter: Shouyang Wang

Application of Activity-Based Costing in a Manufacturing Company: A Comparison with Traditional Costing

Presenter: GONCA TUNCEL, UNIVERSITY OF DOKUZ EYLUL, TURKEY

Welfare for Economy under Awareness

Presenter: KEN HORIE, Ibaraki National College of Technology, JAPAN

On-line Multi-attributes Procurement Combinatorial Auctions Bidding Strategies

Presenter: JIAN CHEN, Tsinghua University, China

Organized by Valeria Krzhizhanovskaya, Bastien Chopard, and Yuriy Gorbachev

Simulation of multiphysics and multiscale (MPMS) systems poses a grand challenge to computational science. A great number of real-life systems, important for industrial applications and academic research, involve interactions amongst a range of physical phenomena (e.g. viscous, turbulent, thermal, chemical, mechanical, electromagnetic or plasma processes). In some systems the time and length scales of processes studied differ by orders of magnitude. Numerical simulation of these multiphysics and multiscale problems requires the development of sophisticated models and methods for their integration, as well as efficient numerical algorithms and advanced computational techniques. Because of the heavy computational demands of such simulations, one needs successful utilization of high-performance computing systems, which inspires progress in algorithms and methodology of parallel distributed computing. The complexity of modeling and data description, the large number and wide range of parameters under investigation, as well as the necessity to control and steer the simulation processes, motivate the development of problem solving environments, user interfaces and code integration methods.

This workshop, being a follow-up of a highly successful event held at ICCS-2004 in Krakow, Poland, aims to bring together computational physicists, numerical specialists and computational scientists to push forward this challenging multidisciplinary research field.

Multiscale finite element modeling of the coupled nonlinear dynamics of magnetostrictive composite thin film

Presenter: Debiprosad Roy Mahapatra, Wilfrid Laurier University, Canada

The Use of Conformal Voxels for Consistent Extractions from Multiple Level-Set Fields

Presenter: Max Bloomfield, Rensselaer Polytechnic Institute, USA

A Dynamic Model for Phase Transformations in 3D Samples of Shape Memory Alloys

Presenter: Roderick Melnik

A Data-Driven Multi-Field Analysis of Nanocomposites for Hydrogen Storage

Presenter: John Michopoulos

Plug and Play approach to Validation of Particle-based Algorithms

Presenter: Giovanni Lapenta

Nonlinear OIFS for a Hybrid Galerkin Atmospheric Model

Presenter: Amik St-Cyr

3D Finite Element Modeling of Free-surface Flows with Efficient k-epsilon turbulence Model and Non-hydrostatic Pressure

Presenter: Célestin Leupi

Flamelet Analysis of Turbulent Combustion

Presenter: Rob Bastiaans, Eindhoven University of Technology, The Netherlands

Large-Scale Fluctuations of Pressure in Fluid Flow through Porous Medium with Multiscale Log-Stable Permeability

Cluster Computing for Transient Simulations of the Linear Boltzmann Equation on Irregular Three-Dimensional Domains

Presenter: Matthias Gobbert, University of Maryland, Baltimore County, U.S.A.

Entropic Lattice Boltzmann Method on Non-uniform Grids

Presenter: V. Babu

A computational model of micro-vascular growth

Presenter: Dominik Szczerba, Computer Vision Lab / Swiss Federal Institut of Technology Zur

Multiscale Angiogenesis Modeling

Presenter: Shuyu Sun, The Institute for Computational Engineering and Sciences, USA

Applications of multiscale modeling to biological systems

The Simulation of a PEMFC with an Interdigitated Flow Field Design

Presenter: Shengmin Guo

Multiscale Modelling of Bubbly Systems using Wavelet-based Mesh Adaptation

Presenter: Yazeng (Tom) Liu, CSIRO Minerals, Australia, Australia

Computational Study in the Effect of Turbulence Intensity and Pulse Frequncy in Soot Concentrartion in an Acetylene Diffusion Flame

Presenter: Ali TURAN, The University of Manchester, UNITED KINGDOM

Organized by Frederica Darema

This workshop will address a new paradigm of symbiotic application&measurement systems, namely applications that can accept and respond dynamically to new data injected into the executing application, and reversely, the ability of such application systems to dynamically control the measurement processes. The synergistic feedback control-loop between application simulations and measurements can open new domains in the capabilities of simulations with high potential pay-off: create applications with new and enhanced analysis and prediction capabilities and enable a new methodology for more efficient and effective measurement processes. This new paradigm has the potential to transform the way science and engineering are done, with major impact in the way many functions in our society are conducted, such as manufacturing, commerce, transportation, hazard prediction/management, and medicine. The workshop will present such new opportunities, as well as the challenges and approaches in the applications', algorithms' and systems' software technologies needed to enable such capabilities, and will showcase ongoing research in these aspects with examples from several important application areas.

Data Driven Applications Systems: New Capabilities for Applicaiton Simulations and Measurements

Presenter: Frederica Darema, National Science Foundation, USA

Dynamic Data Driven Methodologies for Multiphysics System Modeling and Simulation

Presenter: John Michopoulos

Towards Dynamically Adaptive Weather Analysis and Forecasting in EAD

Presenter: Beth Plale, Indiana University, USA

Towards a Dynamic Data Driven Application System for Wildfire Simulation

Presenter: Janice Coen, National Center for Atmospheric Research, USA

Multiscale Interpolation, Backward in Time Error Analysis for Data-Driven Contaminant Simulation

Presenter: Craig Douglas, University of Kentucky and Yale University, USA

Ensemble-Based Data Assimilation for Atmospheric Chemical Transport Models

Presenter: Adrian Sandu, Virginia Tech, USA

Towards Dynamic Data-Driven Optimization of Oil well Placement

Presenter: Manish Parashar, Rutgers University, USA

High-Fidelity Simulation of Large Scale Structures

Presenter: Christoph Hoffmann, Purdue University, USA

A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery

Presenter: Majumdar,A.

Structure-based Integrative Computation and Experimental Approach for the Optimization of Drug Design

Presenter: Dimitrios Morikis, University of California at Riverside, USA

Simulation and Visualization of Air Flow Around Bat Wings During Flight

Presenter: Pivkin,I.V.

Integrating Fire, Structure and Agent Models

Presenter: Chaturvedi,R.

A Dynamic, Data-Driven, Decision Support System for Emergency Medical Services

Presenter: Mark Gaynor, Boston University, USA

Dynamic data Driven Coupling of Continuous and Discrete Methods in 3D Tracking

Presenter: Dimitris Metaxas, Rutgers University, USA

Semi-Automated Simulation Transformation for DDDAS

Presenter: David Brogan, University of Virginia, USA

The Development of Dependable and Survivable Grids

Presenter: Marty Humphrey

On the Fundamental Tautology of Validating Data-Driven Models and Simulations

Presenter: John Michopoulos

Organized by Alex Galis

Next Generation Girds architectures should support dynamic, reconfigurable on-demand, secure and highly customizable computing, storage and networking environments. In opposite to the existing grid architectures relaying on rather static services, the new grids architecture could exploit active, programmable grids (computational, storage, networking, serviceware) resources and components. The active and programmable grids architecture may be seen as an extension of the active networks paradigm to grid systems. It aims at providing easy introduction of new services by adding dynamic programmability to the grid resources. The goal of this workshop, to be held in conjunction with the ICCS 2005 conference (www.iccs-meeting.org), is to bring together researchers interested in all aspects of active grid resources services, and programmability concept application to a new grid middleware design and implementation.

An Active Platform as Middleware for Services and Communities Discovery

Presenter: Sylvain Martin, Research Unit in Networking, Université de Liège, Belgium

Resource Partitioning Algorithms in a Programmable Service Grid Architecture

Presenter: Pieter Thysebaert, UGent, Belgium

Triggering Network Services Through Context-Tagged Flows

Presenter: Roel Ocampo, University College London, United Kingdom

Dependable Execution of Workflow Activities on a Virtual Private Grid Middleware

Presenter: Saverio Lombardo, ICAR/CNR Dep. of Palermo, Italy

p2pCM: A Structured Peer-to-Peer Grid Component Model

Presenter: Carles Pairot

Cost Model and Adaptive Scheme for Publish/Subscribe Systems on Mobile Grid Environments

Presenter: Sangyoon Oh

Near-Optimal Algorithm for Self-Configuration of Ad-hoc Wireless Networks

Presenter: Sung-eok Jeon, Georgia Tech, USA

Organized by Vassil Alexandrov, Aneta Karaivanova, Ivan Dimov, and Michael Mascagni

Scalable and efficient parallel algorithms for large scale scientific and industrial applications for distributed computing environments are of increasing importance, especially with the latest advances in Grids and Grid computing since they enable us to close the performance gap in certain cases. One of this type of algorithms are Monte Carlo and Quasi-Monte Carlo algorithms, which according to the current statistics use over 60% of the computing time of the US DoE machines for various simulation and modeling tasks.

In this workshop we will focus on outlining how the generic properties of coarse grained Monte Carlo and Quasi-Monte Carlo methods can be used to improve their performance and will compare their efficiency with the corresponding deterministic methods. We will consider Monte Carlo and Quasi-Monte Carlo algorithms for Boundary Value Problems, Solving Multidimensional Integrals and Linear Algebra Problems, etc and how these more efficient algorithms are applied to efficiently solving a diverse large scale problems such as Air Pollution Modeling, Atomic Level Simulation, Problems in Computational Biology etc. Experimental results showing the efficiency of the algorithms running on the local clusters and in a Grid environment will be presented.

A Superconvergent Monte Carlo Method for Multiple Integrals on the Grid

Presenter: Sofiya Ivanovska

A Sparse Parallel Hybrid Monte Carlo Algorithm for Matrix Computations

Presenter: Simon Branford, University of Reading, UK

Parallel Hybrid Monte Carlo Algorithms for Matrix Computations

Presenter: Vassil Alexandrov, University of Reading, UK

An Efficient Monte Carlo Approach for Solving Linear Problems of Biomolecular Electrostatics

Presenter: Michael Mascagni, Florida State University, USA

Finding the Smallest Eigenvalue by the Inverse Monte Carlo Method with Refinement

Presenter: Aneta Karaivanova

On the Scrambled Sobol Sequence

Presenter: Hongmei Chi, Florida A&M, United States

Organized by Jemal Abawajy and Maria Pérez

Grid computing is an emerging technology that enables large-scale sharing of widely distributed resources and coordinated problem-solving and collaboration between groups of scientists. The dynamic and multi-institutional nature of grid computing environment introduces challenging security issues that demand new technical approaches. The purpose of this workshop is to bring together researchers, developers, and users of grid computing from academia, business and industry with experience in the area of security aspects related to grid infrastructures, grid applications and grid resource management.

An Intrusion-Resilient Authorization and Authentication Framework for Grid Computing Infrastructure

Presenter: GUO Yuanbo, School of Electronic Technology, Information Engineering University,

GIVS: Integrity Validation for Grid Security

Presenter: Giuliano Casale, Politecnico di Milano, italy

Dynamic and Fine-grained Authentication and Authorization Architecture for Grid Computing

Presenter: Hyunjoon Jung, Seoul National University, South Korea

GridSec: Trusted Grid Computing with Security Binding and Self-Defense against Network Worms and DDoS Attacks

Presenter: Kai Hwang, University of Southern California, USA

A New Trust Framework for Resource-Sharing in the Grid Environment

Presenter: hualiang hu, College of Computer Science, Zhejiang University, P. R. China

On the Impact of Reservations from the Grid on Planning-Based Resource Management

Presenter: Achim Streit, Research Center Juelich (FZJ), Germany

Genius: Peer-to-Peer Location-Aware Gossip Using Network Coordinates

Presenter: Ning Ning, Tsinghua University, China

Design and Implementation of DAG-based Co-scheduling of RPC in the Grid

Presenter: Jihyun Choi, Gwangju Institute of Scinece and Technology, USA

DCP-Grid, A Framework for conversational distributed transactions on grid environments

Presenter: Manuel Salvadores

Performance Analysis of Interconnection Networks for Multi-Cluster Systems

Presenter: Jemal Abawajy

Autonomic Job Scheduling Policy for Grid Computing

Organized by Jiri Kroc

The main goal of this workshop is to bring together researchers working with complex systems within diverse scientific fields as biology, physics, mathematics, and many others. The restriction on papers is that a cellular automaton should express a complex system. Complex systems are proven to be the powerful computational concept that help us to capture the essence of many real systems where other approaches and methods failed. Cellular automata enable us to define and to work with complex systems effectively and easily. This workshop is opened to other fields related to complex systems and/or cellular automata as well.

The theme of this workshop lies in the heart of the conference main theme, i.e. it is designed to hit the community, which pioneer computational methods in a wide range of fields as biology, physics, engineering and many other fields. Our personal experience is that such contact of researches from completely diverse field could leads to a mutual cross-fertilization of all the above mentioned fields and stimulate their own research!

The dynamics of general fuzzy cellular automata

Presenter: Angelo Mingarelli, Carleton University, Canada

A Cellular Automaton SIS Epidemiological Model with Spatially Clustered Recoveries

Presenter: David Hiebeler, University of Maine, USA

A Cellular Automata Model of Competition in Technology Markets with Network Externalities

Presenter: James Reggia, University of Maryland, US

Self-Organizing Dynamics for Optimization

Constructibility of Signal-Crossing Solutions in von Neumann 29-State Cellular Automata

Presenter: William R. Buckley, California Evolution Institute, USA

Evolutionary Discovery of Arbitrary Self-Replicating Structures

Presenter: Zhijian Pan, University of Maryland, College Park, USA

Modelling Ant Brood Tending Behavior with Cellular Automata

Presenter: Daniel Merkle, University of Leipzig, Germany

A Realistic Cellular Automata Model to Simulate Traffic Flow at Urban Roundabouts

Presenter: Mingzhe Liu, Institute of Information Sciences and Technology, Massey University

Probing the Eddies of Dancing Emergence: Complexity and Abstract Painting

Presenter: Tara Krause

Organized by Jun Ni and Shaoping Xiao

Nanotechnology has become an exciting field in basic sciences and has many potential applications. This field will have a significant impact on medicine, electronics, and materials in the near future. Current research in this area requires not only multi-disciplinary knowledge in science and engineering, but also high-end technology in computational science and computing recourses. Such research demands the cooperation of specialists from the fields of materials science, biomedicine, mechanical engineering, chemistry, mathematics, statistics, physics, computer science, and other related sciences. Many nano-science explorations rely on mature, efficient computational algorithms, practical and reliable numerical methods, and large-scale computing systems.

This session serves as a great opportunity for academic researchers developers, and practitioners to discuss various aspects of computational methods and problem solving solutions in nano-science and technology research.

Increasing our knowledge in the electronic properties of large nanostrutures through applied mathematics and computational science

Numerical Simulation of Self-Heating InGaP/GaAs Heterojunction Bipolar Transistors

Presenter: Yiming Li

Characterization of a Solid State DNA Nanopore Sequencer Using Multi-Scale (Nano-to-Device) Modeling

Presenter: Jerry Jenkins, CFD Research Corporation, USA

Comparison of Nonlinear Conjugate-Gradient Methods for Computing the Electronic Properties of Nanostructure Architectures

Presenter: Stanimire Tomov, Innovative Computing Laboratory, USA

Nanoelectronic Devices: Status and Challenges in Computational Modeling - More general laying out issues, and/or Quantum Mechanical Modeling of Nanodevices

Multiscale Computational Materials Simulations for Carbon Nanotubes and Composites

Electronic excitations in million-atom semiconductor nanostructures

Presenter: M. Claudia Troparevsky and Alberto Franceschetti

Adaptive Finite Volume Simulation of Electrical Characteristics of Organic Light Emitting Diodes

Presenter: Yiming Li

The Applications of Meshfree Particle Methods at the Nanoscale

Presenter: Shaoping Xiao, The University of Iowa, USA

A Grid-based Bridging Domain Multiple-scale Method for Computational Nanotechnology

Presenter: Shaowen Wang

Signal Cascades Analysis in Nanoprocesses with Distributed Database System

Presenter: Dariusz Mrozek

Organized by Adrian Sandu

The workshop will bring together computational and domain scientists who develop computational tools for the study of the atmosphere and oceans. Topics include numerical and adaptive simulations, data assimilation algorithms, variational methods, nonlinear ensemble methods, as well as data analysis and information retrieval.

On Adaptive Mesh Refinement for Atmospheric Pollution Models

Presenter: Emil Constantinescu, Virginia Tech, USA

Total Energy Singular Vectors for Atmospheric Chemical Transport Models

Presenter: Wenyuan Liao, Virginia Tech, USA

Application of Static Adaptive Grid Techniques for Regional-Urban Multiscale Air Quality Modeling

Presenter: Daewon Byun, University of Houston, USA

On the Accuracy of High-Order Finite Elements in Curvilinear Coordinates

Presenter: Amik St.-Cyr

Analysis of discrete adjoints for upwind numerical schemes

Presenter: Zheng Liu, Virginia Tech, USA

The impact of background error on incomplete observations for 4-D Var data assimilation with the FSU GSM

Presenter: Ionel Michael Navon, Florida State University, USA

Organized by Vassil Alexandrov

Tools For Collaborative VR Application Development

Presenter: Adrian Haffegee, University of Reading, UK

Multicast Application Sharing Tool - Facilitating the eMinerals Virtual Organisation

Presenter: Gareth Lewis, University of Reading, UK

The Collaborative P-GRADE Grid Portal

Presenter: Gareth Lewis

An Approach for Collaboration and Annotation in Video Post-Production

Presenter: Karsten Morisse, University of Applied Sciences Osnabrueck, Germany

A Toolbox supporting Collaboration in Networked Virtual Environments

Presenter: Christoph Anthes, GUP, Institute of Graphics and Parallel Processing, Johannes K

A Peer-to-Peer Approach to Content Dissemination and Search in Collaborative Networks

Presenter: Ismail Bhana, University of Reading, UK

Stochastic Fluid Model Analysis for Campus Grid Storage Service

Presenter: Zhiqun Deng

An Application of the Adomian Decomposition Method for Inverse Stefan Problem with Neumann's Boundary Condition

Presenter: Damian Słota

Data-parallel Georeference of MODIS Level 1B Data Using Grid Computing

Presenter: Yincui Hu, Institute of Remote Sensing Applications,Chinese Academy of Sciences,

Grid Computing Environment Using Ontology Based Service

Presenter: Mario Dantas

Dimension Reduction for Clustering Time Series using Global Characteristics

Presenter: Xiaozhe Wang, Faculty of Information Technology, Australia

Reconstruction algorithm of signals from special samples in spline spaces

Presenter: Jun Xian, Department of Mathematics, Zhejiang University, P. R. China

Fast Hybrid In-place Integer Radix Sorting

Presenter: Fouad El-Aker, University of Petra, Jordan

A Hybrid Mining Model Based on Neural Network and Kernel Smoothing Technique

Presenter: Defu Zhang, Xiamen University, China

Improved Fully Automatic Liver Segmentation Using Histogram Tail Threshold Algorithms

An Efficient User-oriented Clustering of Web Search Results

Presenter: Keke Cai, Zhejiang University, P.R.China

Group Homotopy Algorithm with Parameterized Newton Iteration For Symmetric Eigen Problems

Presenter: Ran Baik, Honam University, Korea

Presenter: Hyun-Sung Kim, Kyungil University, Korea

G1 continuity triangular patches interpolation based on PN triangles

Presenter: Zhihong Mao, Dept. of Computer Science and Engineering, Shanghai Jiao Tong Unive

Numerical Simulation of Three-Dimensional Vertically Aligned Quantum Dot Array

Presenter: Weichung Wang, National University of Kaohsiung, Taiwan

Artificial Immune System for medical data classification.

Presenter: Mariusz Swiecicki

Directly Rasterizing Straight Line by Calculating the Intersection Point

Presenter: Hua Zhang, Institute of Computer Applications, China Academy of Engineering Phys

Iterative and Parallel Algorithm Design from High Level Language Traces

Presenter: Joseph Rushton, Texas Tech University, USA

Distributed Object-oriented Wargame Simulation on Access Grid

Presenter: Joong-Ho Lim, Korea University Electronic Engineering, Republic of Korea(South K

RTI Execution Environment using Open Grid Serivce Architecture

Presenter: Ki-young Choi, Korea University Electronic Engineering, Republic of Korea(South

PrefixUnion: Mining Traversal Patterns Efficiently in Virtual Environments

Presenter: Shao-Shin Hung, Department of Computer Science and Information Engineering, Nati

EFoX: a Scalable Method for Extracting Frequent Subtrees

Presenter: Juryon Paik, Sungkyunkwan University, Republic of Korea

An Engineering Computation Oriented Grid Project:Design and Implementation

Presenter: Xianqing Wang, Guangdong Institute of Technological Personnel, P. R. China

Efficient Interactive Pre-integrated Volume Rendering

Presenter: Heewon Kye, Seoul National University, Korea

Heterogeneous Grid Computing: Issues and Early Benchmarks

Presenter: Eamonn Kenny, Trinity College Dublin, Ireland

GRAMS: Grid Resource Analysis and Monitoring System

Presenter: Hongning Dai, Shanghai Jiao Tong University, P.R. China

On Algorithm for Estimation of Selecting Core

Presenter: Youngjin Ahn

Ncvtk: A program for visualizing planetary data

Presenter: Alexander Pletzer, GFDL-RSIS, USA

Efficient multimodality volume fusion using graphics hardware

Presenter: Helen Hong, Seoul National University, Korea

Estimating 3D Object Coordinates from Markerless Scenes

Presenter: Ki Woon Kwon, Korea University, Korea

Transaction Oriented Computing (Hive Computing) using GRAM-Soft

Presenter: Kaviraju Ramanna Dyapur

An Efficient Real-Time Frequent Pattern Mining Technique Using Diff-Sets

Presenter: Ambuj Mahanti

Simulating Market Dynamics with CD++

Presenter: Gabriel Wainer, Carleton University, Canada

A model of virus spreading using Cell-DEVS

Presenter: Gabriel Wainer

An Enhanced Location Management Scheme for Hierarchical Mobile IPv6 Networks

A Meta-Heuristic Applied for a Topologic Pickup and Delivery Problem with Time Windows Constraints

Presenter: J. Fabian Lopez

A Genetic Machine Learning Algorithm for Load Balancing in Cluster Configurations

Presenter: Daäntas, M

A Parallel Algorithm for Computing Shortest Paths In Large-scale Networks

Presenter: Xiaohui, P.

A Fair Bulk Data Transmission Protocol in Grid Environments

Presenter: Fanjun Su, College of Computer Science, Zhejiang University, PRC

A space-efficient algorithm for pre-distributing pairwise keys in sensor networks

Presenter: SANGJIN KIM, Korea University of Technology and Education, Republic of Korea

Exploiting Parallelization for RNA Secondary Structure Prediction in Cluster

Presenter: Shengzhong Feng

Improving Performance of Distributed Haskell in Mosix Clusters

Presenter: Lori Collins, Brooklyn College, USA

Transaction Routing in Real-Time Shared Disks Clusters

Presenter: Haengrae Cho, Yeungnam University, South Korea

A Neural Network Model for Classification of Facial Expressions Based on Dimension Model

Presenter: Young-Suk Shin, Department of Information Communication Engineering, Chosun Univ

Investigation of Cache Coherence Strategies in a Mobile Client/Server Environment

Presenter: Mario Antonio Ribeiro Dantas, University of Santa Catarina, Brazil

A Method For Local Tuning Of Fuzzy Membership Functions

Presenter: Ahmet

Parallel Files Distribution

Presenter: Laurentiu Cucos, Western Michigan University, U.S.

Graph representation of nested software structure

Dynamic Dominant Index Set for Mobile Peer-to-Peer Networks

Presenter: Wei Shi, College of Computer Science, Zhejiang University, Hangzhou, P.R. China,

Hierarchical Infrastructure for Large-Scale Distributed Privacy-Preserving Data Mining

Presenter: Jinlong Wang, Institute of Artificial Intelligence, Zhejiang University, China

Three classifiers for acute abdominal pain diagnosis - comparative study

A Quick Generation Method of Sequence Pair for Block Placement

Presenter: Mingxu Huo, Zhejiang University, China

Task Mapping Algorithm for Heterogeneous Computing System Allowing High Throughput and Load Balancing

Presenter: Sung Chune Choi, Sungkyunkwan University, Korea

QoS-enabled Service Discovery Using Agent Platform

Presenter: kee hyun choi, School of Information and Communication Engineering Sungkyunkwan

An Architecture for Lightweight Service Discovery Protocol in MANET

Presenter: Byongin Lim, School of Information and Communication Engineering SungKyunKwan Un

An Approach for Eye Detection Using Parallel Genetic Algorithm

Presenter: A. Cagatay Talay, Istanbul Technical University, Turkey

Meta Services: abstract a workflow in Computational Grid Environments

Presenter: Sangkeon Lee, Soongsil University, Republic of Korea

Implementation of a Distributed Data Mining System

Presenter: Ju Sang Cho, Department of Digital Contents, Sejong University, Korea

CEGA: A Workflow PSE for Computational Applications

eMicrob: a Grid-based Spatial Epidemiology Application

Presenter: Jianping Guo, Institute of Remote Sensing Applications, CAS,China, China

Grid-Technology for Chemical Reactions Calculation

Presenter: Elena Stankova

PK+ Tree: An Improved Spatial Index Structure of PK Tree

Presenter: Xiaolin WANG

Fuzzy System Analysis of Beach Litter Components

An Abstract Model for Service Compositions Based on Agents

Presenter: Jinkui Xie, Dept. of Computer Science and Engineering, Shanghai Jiao Tong Univer

Uniformly Convergent Computational Technique For Singularly Perturbed Self-Adjoint Mixed Boundary-Value Problems

Presenter: Rajesh Kumar Bawa, Punjabi University, Patiala, Punjab, INDIA, India

Comfortable Driver Behavior Modeling for Car Following of Pervasive Computing Environment

Presenter: Yanfei Liu, College of Computer Science, Zhejiang University, People Republic of

An Approach of Nonlinear Model Multi-step-ahead Predictive Control Based on SVM

Presenter: Weimin Zhong, Institute of Modern Control Engineering of Zhejiang University, Ch

Simulation Embedded in Optimization - a Key for the Effective Learning Process in (about) Complex, Dynamical Systems

Presenter: El{\z}bieta Kasperska

Boundary Effects in Stokes' Problem with Melting

Presenter: Arup Mukherjee, Montclair State University, USA

Analysis of the Chaotic Phenomena in Securities Business of China

Presenter: FU Chong, School of Information Science & Engineering, NorthEastern University,

Pulsating Flow and Platelet Aggregation

Presenter: X S Yang

Predicting Satellite Passage over a Target Location in a Non-Perturbed Simulated Environment

Presenter: Hamad,Safwat

Heuristic Algorithm for Anycast Flow Assignment in Connection-Oriented Networks

Presenter: Krzysztof Walkowiak, Wroclaw University of Technology, Poland

Isotropic Vector Matrix Grid and Face-Centered Cubic Lattice Data Structures

Presenter: J. F. Nystrom, University of Akureyri, Iceland

Context Adaptive Self-Configuration System

Presenter: Eunseok Lee, Sungkyunkwan University, KOREA

A Software Debugging Method Based on Pairwise Testing

Presenter: Liang Shi, Dept of Computer Science and Engineering, Southeast University, China

The Design of Fuzzy Controller by Means of Evolutionary Computing and Neurofuzzy Networks

Presenter: Ahn,T.-C.

Prediction of Protein Interactions by the Domain and Sub-cellular Localization Information

Presenter: Han,K.

Online Prediction of Interacting Proteins with a User-Specified Protein

Presenter: Han,K.

Modeling of Communication Delays aiming at the Design of Networked Supervisory and Control Systems. A first approach

Presenter: Karina Cantillo

Design of Evolutionally Optimized Rule-based Fuzzy Neural Networks Based on Fuzzy Relation and Evolutionary Optimization

Presenter: Sung-Kwun Oh, Department of Electrical Engineering, The University of Suwon, Sou

Virtual States and Transitions, Virtual Sessions and Collaboration

Traffic Grooming Based on Shortest Path in Optical WDM Mesh Networks

Presenter: Yeo-Ran Yoon, School of Information and Communication Engineering, Sungkyunkwan

Architecture Modeling and Simulation for Supporting Video Services in Broadband Wireless Networks

Presenter: Dohyeun Kim

Computational Complexity and Distributed Execution in Water Quality Management

Presenter: Maria Chtepen, Ghent University, Belgium

A Secure Peer-to-Peer Group Collaboration Scheme for Healthcare System

Presenter: Byongin Lim, School of Information and Communication Engineering Sungkyunkwan Un

Exactness of Stochastic Models of a Financial Market and Sensitivity of Contingent Claims

Presenter: Aleksander Janicki

Solving Anisotropic Transport Equation on Misaligned Grids

Visualization for Genetic Evolution of Target Movement in Battle Fields

Presenter: Cho, J.

Prompt Detection of Changepoint in the Operation of Networked Systems

Presenter: Hee Yong Youn

The Monte Carlo and Molecular Dynamics Simulation of Gas-Surface Interaction

Presenter: Sergey Borisov

Large Eddy Simulation of Spanwise Rotating Turbulent Channel and Duct Flows by a Finite Volume Code at low Reynolds numbers

Presenter: Turan,Ali

Modelling Dynamics of Genetic Networks As a Multiscale Process

Presenter: Roderick Melnik

Mathematical model of environmental pollution by motorcar in an urban area

Presenter: Valeriy Perminov

A Courseware Development Methodology for Establishing Practice-based Network Course

Presenter: Jahwan Koo, Sungkyunkwan University, Kyounggi-do

Organized by Dr. Dieter Kranzlmueller and Dr. Andreas Knuepfer

Organized by Dr. Andreas Iglesias

Organized by Dr. David Bernholdt

Organized by Dr. Jun Ni, Dr. Deepak Srivastava, Dr. Shaoping Xiao, and Dr. M. Meyyappan

Organized by Prof. Tae-Jin Lee and Prof. Hyunseung Choo

Organized by Prof. Tony Hu

Organized by Dr. Gunther Stuer

Technologies for HPC Systems and Interconnects

Computational Science and High Performance Computing

Dynamic Data Driven Applications and Systems

Mainstream Reconfigurable Computing: Breaking Barriers

eScience with Databases and Web Services

Reception sponsored by Departament of Math and Computer Science, Emory University.

Reception/dinner sponsored by Emory University Provost's Office and Graduate School.

Buses will leave from Math and Science Center between 5:45 and 6:00 PM